Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948438.1_cds_XP_016489716.1_80211
CDS Infomation

[gene=LOC107809569] [db_xref=GeneID:107809569] [protein=pentatricopeptide repeat-containing protein At5g24830-like] [protein_id=XP_016489716.1] [location=complement(join(62179..63604,71766..71924,72029..72174,72260..72268))] [gbkey=CDS]
Sequence

ATGCAGCCTTTATTGCTTGTCTCCGAGGAATCTCAATTTCTTATTCGGATACTGAACGGG
AGTTTTCAAACCCTAAACATTATTAAAGACCGTGTTTTTCATGCATTTGGCGATTTATTC
TGCTCGAAAGCGAATTTGGATGTTATCGACACGAGACAAGATAATGTAGTGCAAAGTGTG
AATCGGGAGGAGCAAGGATCCAATGATTGGTCGTCTAAGGGGAACAATTCCAATCTAGAA
GGGGATTCCAGAGTGGGTTTCAACGTGTTGGATGCGATGTTAAAGCATAGTTTGGATCGT
CTGAAGTGTATGAGGGAAAGAGTATCCTCAGCTGAAGCAGGCATTAGTAACTGCAACTTG
GAAATAAATTTCAATAGAGACTCATATGTTATTAGAGCTATGTGTCTGGATGGTAAACTG
GGGGCAGCTTTATCTCTTTGGTGCAACATGATACAACATAGTATTATTCCCGATGGGATC
ACACACAATTACCTCATCAATGGACTGTGCAAAAAGGGTGAATTGGAGAAGGCAGAATGG
ATTGTTAGAGGTATGTTATATAGGGGTCCTTCTCCCACTTGTGCTACGTACAATTCCTTA
ATAAGGGGTTATTGCCTCATGAATGGCGTCGATAAAGCTCTAAACACCTTTTCTACCATG
GCCAACCATGGAATTATACCAAGCAGAGTTACTTGTAACATTCTTGTTCATGCGCTTTGT
AAGAAGGGCTTGGTGGAGGAGGCGAAAAAGCTTTTCCATAAATTACTAAGCAAAAATCAT
GATGGGGGGAGCTCAGATTTGATTACGTCAACCATAATGATGGATGGCTGCTTCAAAAAT
GGAGATACTGATCAAGCTCTTGCTTTTTGGGAGAGGATGTTAAAAGAGGGTATCAAAGTT
GATAAAGTTTCTTACAATGTTGTCGTCCATGGATTCTGTATGAGCCATGACGTGGGTACT
GCATATAAGTATTGCTGTGAAATGCTAAAGCTTGGTTTCCTTCCAGATGTTTATTCTTAC
AACACTCTTGTTGGAGCACTTTGTAAAAAAGGAAAGACCAGTGATGCTTGTTATATCTAT
GATGTTATGACAAGAATGGGTGTCACCCCAGATCAAATTACGTACAAAATGATAATACAG
GGCCTATGTATTAACAGGGAGATTGATAGAGCCGGCTGTTTTCTTGAATACATGTTACAG
AAATCCATTATACCGGAACCCCTTGTTTGGAATGTTATAATTGATGGTTATGGAAGATGT
GGAGATATTGAGAAAGCTTCATATATTAGGGACAAAATGGTTGCATTTGGTGTTCTACCA
AACATATTTACATATAATGCATTGATTTATGCGCAGATAAAGTCAGGAAATCTTTTTGCA
GCTCAGTCCTTGGAGAAGGAGATGCTTTTGTGTGGTCTTACGCCTGATTCAGTTACTTAC
AATCTGTTGATTGGTGCTGCTTGTAATCTTGGCCTGATTCACTCGGCACTTCAGCTACAT
GACCAAATGTTGAGAAAAGGTTGTCAGCCAGATGTAATAACTTACAGCAAACTACTTAAG
GTGTTTTGTCTACAAGGTATGATGAAAGAGGCAGACAAGCTCTTTGGGAAGTTACTGGCA
TCTGGTTTAGCTGTTGATCATGTTCCCTTTCTAATACTCATGAAAAGATACTGCAGAATG
AGAGAATTTGATAAAGTCTTTGACCTTTACCAAAAGTGGTTAGTGGCAATGCCTAGATGA

Peptide Sequence

PEP ID

XP_016489716.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like [Nicotiana tabacum]
Sequence

MQPLLLVSEESQFLIRILNGSFQTLNIIKDRVFHAFGDLFCSKANLDVIDTRQDNVVQSV
NREEQGSNDWSSKGNNSNLEGDSRVGFNVLDAMLKHSLDRLKCMRERVSSAEAGISNCNL
EINFNRDSYVIRAMCLDGKLGAALSLWCNMIQHSIIPDGITHNYLINGLCKKGELEKAEW
IVRGMLYRGPSPTCATYNSLIRGYCLMNGVDKALNTFSTMANHGIIPSRVTCNILVHALC
KKGLVEEAKKLFHKLLSKNHDGGSSDLITSTIMMDGCFKNGDTDQALAFWERMLKEGIKV
DKVSYNVVVHGFCMSHDVGTAYKYCCEMLKLGFLPDVYSYNTLVGALCKKGKTSDACYIY
DVMTRMGVTPDQITYKMIIQGLCINREIDRAGCFLEYMLQKSIIPEPLVWNVIIDGYGRC
GDIEKASYIRDKMVAFGVLPNIFTYNALIYAQIKSGNLFAAQSLEKEMLLCGLTPDSVTY
NLLIGAACNLGLIHSALQLHDQMLRKGCQPDVITYSKLLKVFCLQGMMKEADKLFGKLLA
SGLAVDHVPFLILMKRYCRMREFDKVFDLYQKWLVAMPR

Transcript Sequence

Gene sequence data has not been registered.